PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00928.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SRS
Protein Properties Length: 438aa    MW: 44619.9 Da    PI: 8.0031
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00928.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.57.2e-682213822154
         DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 
                    +sgt++CqdCGnqakkdC+h+RCRtCCksrg+dCathvkstWvpaa+rrerq +++aa    a s+ +++  k++r   +++q+++s+t++s++++
  Jcr4S00928.20 221 SSGTTTCQDCGNQAKKDCTHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMASAAGGGGAVSSgSTSGIKKPRL--INSQTTTSHTSTSNTTP 314
                    57899**********************************************88877776665555535666666665..6999************* PP

         DUF702  97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                    +++++tss          lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e+
  Jcr4S00928.20 315 PRSFDTSSshqdasfkeaLPGQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVET 382
                    ******999********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-62224381IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.6E-27226268IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.8E-30333380IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAASIVVVAT TRSRQLLSDS GAFADWAGSS SSSAIRAAGP DDLSLGFNAG PTAAAAAATA  60
AAGGGPTGPS WPSAARPINY GIPPEMGMFV VAPAASFNHH HHHQQHESNI NLANDPINGS  120
NAAAAAAAAT ALGVGVGVGV IPLLTAGPCL GSQNMDDQDL LSNGRNRVSG IQFWQNQHSQ  180
YNIKKTTGSI LDHHNNSSSP NLLQTGNNTN SGGGIGGNST SSGTTTCQDC GNQAKKDCTH  240
RRCRTCCKSR GYDCATHVKS TWVPAARRRE RQLMASAAGG GGAVSSGSTS GIKKPRLINS  300
QTTTSHTSTS NTTPPRSFDT SSSHQDASFK EALPGQVRAP AVFKCVRVTA VDDGEDEYAY  360
QAVVKIGGHV FKGFLYDQGV ETRDGFPNIS ELHLGGGGGD GGGRNGASSS SPILDPTDVY  420
GASGGGLLGG SSYGNPIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065906.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_012065907.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK92e-89LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A067L4D40.0A0A067L4D4_JATCU; Uncharacterized protein
STRINGPOPTR_0009s07510.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.44e-73Lateral root primordium (LRP) protein-related